rs33573421 SNP Detail

Summary

• ID
  rs33573421
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17691798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGA ATTGGTGTGT CAAAAGAGGT
  Y
  GTACATCAAT GGAATCTCTG AAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47814782	NES11714497	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	C	T	C		T	T		C	C	T	C		C
ss133020599	ENSMUSSNP5110995	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T						T
ss321756036	CHEV_6_17641799	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33573421					SNP	C	T	T	T	C	T	C	T	T	T	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814782	NES11714497	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17691798 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	1876 bp proximal
Gm55211	predicted gene, 55211	1627 bp upstream
Rr626833	regulatory region 626833	404 bp proximal
Rr626834	regulatory region 626834	1778 bp proximal
St7	suppression of tumorigenicity 7	1781 bp upstream
Tssr55085	transcription start site region 55085	1808 bp upstream