rs33573423 SNP Detail

Summary

• ID
  rs33573423
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17691833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTTTCAA GAAGCATCCC
  ACTAGTGATT GGCAAAATCA TGAATAAAGC CCTATACCTA GTAGGCCTAT GCTGTAATGG
  CCCACTACTA GCCTCCTGGT GCTGCATCTT TCAGAAAAGG ATGAGTGGTG TGATGGTCTG
  ATGGAATTGG TGTGTCAAAA GAGGTCGTAC ATCAATGGAA TCTCTGAAAA ATCTGCTAAT
  R
  GGAACATGTT GCCTGGCTGG GAAGGGCAGC CAGAGAAATA TATGACAGGT AGTATGGAGC
  AGGAGGACAA AAGTGCCCGG CAAAATACTA TATGCCATCT ACATATCATT TTTAGATAGA
  TGATGATGAG GTGGTGGTAG TAAAATTGGT GGTAGGAACC CACAACATAG TTCCCTCTAG
  GTAACAATCA GGCTGTAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47814784	NES11714498	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A	A		A	A	G	G	A	G	A
ss133020602	ENSMUSSNP488407	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A						A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33573423					SNP	G	A	A	A	A	A	A	A	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814784	NES11714498	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17691833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	1841 bp proximal
Gm55211	predicted gene, 55211	1592 bp upstream
Rr626833	regulatory region 626833	369 bp proximal
Rr626834	regulatory region 626834	1743 bp proximal
St7	suppression of tumorigenicity 7	1746 bp upstream
Tssr55085	transcription start site region 55085	1773 bp upstream