rs33573715 SNP Detail

Summary

• ID
  rs33573715
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:20207041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAGTGTT AGTGTTCCAA
  GGACAAGGAG ACAGACAGGC AGGTAATCTT TACCTCATGG AGTCTGAAAC CTGTGGGCTG
  GTGAGTACAA CCATCCTCCT AGTAGTCCTG TGCTGTTTCA AAGATGAGCC CAGGACCAGC
  GCACCTTTGG CATAGGCATC GTTTGTGGTC AGCGTCACAA AAGCCTGATC TTAATACAAA
  S
  AAAAAGAAGC ATATCTCAGC TGAAAAGAAT TTTCCCCAGG TGTTCTCTCA ACCAACAGTT
  CAGCAAAATC ATCTCACAGA TCAACTTAGT TAATGAGGCA GCGGCCCCTT TTGTGGGAAA
  GCTCACACAG GTATCTATCT AGGAATAGGC TAAACCTGCA GCTTAGCAGG AATGCCAGGT
  AACCTCCAAG ACGATCACAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46830134	NES10860283	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33573715					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46830134	NES10860283	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20207041 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13009	CpG island 13009	1531 bp proximal
Gyg1	glycogenin 1	Intron
Rr574068	regulatory region 574068	1708 bp proximal