rs33574065 SNP Detail

Summary

• ID
  rs33574065
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131405770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGATGCTCT GAAAATGTCA TGTGCATGTC CTTGGTGCCT
  GGTTTATTCC TTGTTGCAGA TGGTGGGATG GTAGAAGCAA TGAAAGCCTC AGTTGTGTTG
  Y
  GACATGAGCT TTCTTCTTCT CCCATCCTGC AGACCATTCA CTGAACTCGA TCCACAAGAG
  CTGAGCCCTT GGCAGGCAAA GTATGACTTA TACACACAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45294618	mCV22780866	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	C
ss147607911	ENSMUSSNP2183766	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33574065					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131405770 () rs orientation: forward

Symbol	Name	Function Class
Adra1d	adrenergic receptor, alpha 1d	1567 bp upstream
Cpgi12295	CpG island 12295	709 bp distal
Gm14285	predicted gene 14285	within coordinates
Rr55657	regulatory region 55657	370 bp distal
Tssr26401	transcription start site region 26401	1348 bp upstream
Tssr26402	transcription start site region 26402	1315 bp upstream
Tssr26403	transcription start site region 26403	1077 bp upstream