rs33574265 SNP Detail

Summary

• ID
  rs33574265
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17691880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGG CAGCCAGAGA AATATATGAC
  R
  GGTAGTATGG AGCAGGAGGA CAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	SM/J	WSB/EiJ
ss47814786	NES11714499	PERLEGEN	MM_PANEL2	f	SNP		G	A	G		G	G			A
ss133020611	ENSMUSSNP3691661	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G			A
ss321756039	CHEV_6_17641881	CHEVERUD	SCREENING_POP	f	SNP								G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	SM/J	WSB/EiJ
rs33574265					SNP	A	G	A	G	A	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814786	NES11714499	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17691880 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	1794 bp proximal
Gm55211	predicted gene, 55211	1545 bp upstream
Rr626833	regulatory region 626833	322 bp proximal
Rr626834	regulatory region 626834	1696 bp proximal
St7	suppression of tumorigenicity 7	1699 bp upstream
Tssr55085	transcription start site region 55085	1726 bp upstream