rs33574267 SNP Detail

Summary

• ID
  rs33574267
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17691906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATGGCCC ACTACTAGCC
  TCCTGGTGCT GCATCTTTCA GAAAAGGATG AGTGGTGTGA TGGTCTGATG GAATTGGTGT
  GTCAAAAGAG GTCGTACATC AATGGAATCT CTGAAAAATC TGCTAATAGG AACATGTTGC
  CTGGCTGGGA AGGGCAGCCA GAGAAATATA TGACAGGTAG TATGGAGCAG GAGGACAAAA
  R
  TGCCCGGCAA AATACTATAT GCCATCTACA TATCATTTTT AGATAGATGA TGATGAGGTG
  GTGGTAGTAA AATTGGTGGT AGGAACCCAC AACATAGTTC CCTCTAGGTA ACAATCAGGC
  TGTAACTAGA GGCCATTGCT GGGAGAAACA CAGAGGTGAT CTGAATCTTG ATGTCTTAAG
  GCCCAGTATA GAATGGAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47814788	NES11714500	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33574267					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814788	NES11714500	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17691906 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	1768 bp proximal
Gm55211	predicted gene, 55211	1519 bp upstream
Rr626833	regulatory region 626833	296 bp proximal
Rr626834	regulatory region 626834	1670 bp proximal
St7	suppression of tumorigenicity 7	1673 bp upstream
Tssr55085	transcription start site region 55085	1700 bp upstream
Tssr55086	transcription start site region 55086	1998 bp upstream