rs33574268 SNP Detail

Summary

• ID
  rs33574268
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17691939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCAGAA AAGGATGAGT
  GGTGTGATGG TCTGATGGAA TTGGTGTGTC AAAAGAGGTC GTACATCAAT GGAATCTCTG
  AAAAATCTGC TAATAGGAAC ATGTTGCCTG GCTGGGAAGG GCAGCCAGAG AAATATATGA
  CAGGTAGTAT GGAGCAGGAG GACAAAAGTG CCCGGCAAAA TACTATATGC CATCTACATA
  Y
  CATTTTTAGA TAGATGATGA TGAGGTGGTG GTAGTAAAAT TGGTGGTAGG AACCCACAAC
  ATAGTTCCCT CTAGGTAACA ATCAGGCTGT AACTAGAGGC CATTGCTGGG AGAAACACAG
  AGGTGATCTG AATCTTGATG TCTTAAGGCC CAGTATAGAA TGGAGAAGAG AAAGGAGAGG
  AAGGAGGGGT TGGTTGACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47814790	NES11714501	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	T	C	T		C	C	C	C	T
ss133020625	ENSMUSSNP5038925	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C						T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33574268					SNP	C	C	C	C	T	C	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814790	NES11714501	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17691939 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	1735 bp proximal
Gm55211	predicted gene, 55211	1486 bp upstream
Gm55212	predicted gene, 55212	1997 bp upstream
Rr626833	regulatory region 626833	263 bp proximal
Rr626834	regulatory region 626834	1637 bp proximal
St7	suppression of tumorigenicity 7	1640 bp upstream
Tssr55085	transcription start site region 55085	1667 bp upstream
Tssr55086	transcription start site region 55086	1965 bp upstream