rs33574269 SNP Detail

Summary

• ID
  rs33574269
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17691998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAA ATTGGTGGTA GGAACCCACA
  R
  CATAGTTCCC TCTAGGTAAC AATCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	SM/J	WSB/EiJ
ss47814792	NES11714502	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	A	G	A		G	G			A
ss133020631	ENSMUSSNP6921251	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G						A
ss321756041	CHEV_6_17641999	CHEVERUD	SCREENING_POP	f	SNP											G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	SM/J	WSB/EiJ
rs33574269					SNP	A	G	G	G	A	G	A	A	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814792	NES11714502	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17691998 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	1676 bp proximal
Gm55211	predicted gene, 55211	1427 bp upstream
Gm55212	predicted gene, 55212	1938 bp upstream
Rr626833	regulatory region 626833	204 bp proximal
Rr626834	regulatory region 626834	1578 bp proximal
St7	suppression of tumorigenicity 7	1581 bp upstream
Tssr55085	transcription start site region 55085	1608 bp upstream
Tssr55086	transcription start site region 55086	1906 bp upstream
Tssr55087	transcription start site region 55087	1966 bp upstream