rs33574271 SNP Detail

Summary

• ID
  rs33574271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17692001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATCAATGG AATCTCTGAA
  AAATCTGCTA ATAGGAACAT GTTGCCTGGC TGGGAAGGGC AGCCAGAGAA ATATATGACA
  GGTAGTATGG AGCAGGAGGA CAAAAGTGCC CGGCAAAATA CTATATGCCA TCTACATATC
  ATTTTTAGAT AGATGATGAT GAGGTGGTGG TAGTAAAATT GGTGGTAGGA ACCCACAACA
  Y
  AGTTCCCTCT AGGTAACAAT CAGGCTGTAA CTAGAGGCCA TTGCTGGGAG AAACACAGAG
  GTGATCTGAA TCTTGATGTC TTAAGGCCCA GTATAGAATG GAGAAGAGAA AGGAGAGGAA
  GGAGGGGTTG GTTGACTGGG GAATTGGCTT ATGAAGAATA TAGTATGAGA AGTTCCATGA
  AAGTCTTGGA GAACCAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47814794	NES11714503	PERLEGEN	MM_PANEL2	f	SNP			T	T	T		T	C	C	C	T
ss133020637	ENSMUSSNP1060648	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33574271					SNP	C	T	T	T	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814794	NES11714503	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17692001 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	1673 bp proximal
Gm55211	predicted gene, 55211	1424 bp upstream
Gm55212	predicted gene, 55212	1935 bp upstream
Rr626833	regulatory region 626833	201 bp proximal
Rr626834	regulatory region 626834	1575 bp proximal
St7	suppression of tumorigenicity 7	1578 bp upstream
Tssr55085	transcription start site region 55085	1605 bp upstream
Tssr55086	transcription start site region 55086	1903 bp upstream
Tssr55087	transcription start site region 55087	1963 bp upstream