rs33574273 SNP Detail

Summary

• ID
  rs33574273
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17692554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAAGAAG AGGTCAAAAT
  GCCTCTTCTG TGGTAGAAGG AGAGTACATT CTCTCTAGTT CTATGGTCTC CAGGTTCTTG
  AATGGTACTC ACACACACTG AAGGTGAACA TTCCCCATCA AATGTGCTCA CACTCACTTC
  TCAGTCTCTT CTGGAAAGAC CCTCGCAGGC AATCCCCAAA CCACTCCTTA GTGCAATTGA
  R
  TTTGCCACCT GGAACTGTCA CAAACAGGCC CCACATCTAC AAATTAACTC AGCCTGTTTT
  ACTATGGAAG AAACTACAAG TCCTTGTAGG AGCAGAAAGG TGTAACACCT CTCCACACCC
  ACTGTAAGGG CCGCAGCCAA CACTCCCATA TATCAGGATG CAAAAGAAAA AGCATGATAA
  ATGAAGCCTG AAAGAATTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47814796	NES11714438	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33574273					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814796	NES11714438	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17692554 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	1120 bp proximal
Gm55211	predicted gene, 55211	871 bp upstream
Gm55212	predicted gene, 55212	1382 bp upstream
Rr626833	regulatory region 626833	within coordinates
Rr626834	regulatory region 626834	1022 bp proximal
Rr626835	regulatory region 626835	1989 bp proximal
St7	suppression of tumorigenicity 7	1025 bp upstream
Tssr55085	transcription start site region 55085	1052 bp upstream
Tssr55086	transcription start site region 55086	1350 bp upstream
Tssr55087	transcription start site region 55087	1410 bp upstream
Tssr55088	transcription start site region 55088	1450 bp upstream
Tssr55089	transcription start site region 55089	1496 bp upstream
Tssr55090	transcription start site region 55090	1615 bp upstream