rs33574407 SNP Detail

Summary

• ID
  rs33574407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84705693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAGGCTGCC CTTGAACTCA AAATCCTGCC TCGGATCTTG
  ATACTTTAAG TCTGTGGTGC CATTCTAACC CTGCTCCTCT TGGCACTGTC CCCCCTCTGC
  Y
  GTGACCCCAA ATGTCTACGA GTAGTGGCTC ATATGCGCCC CCATACTAGT GAGCCTGAGT
  CAGGAGGACT GCTCAGAGTT CAGAGAAGGC CTGGGCTCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46292800	mCV22733949	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss145368160	ENSMUSSNP1888865	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss322746878	CHEV_8_86502963	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33574407					SNP	T	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84705693 () rs orientation: forward

Symbol	Name	Function Class
Prkaca	protein kinase, cAMP dependent, catalytic, alpha	within coordinates
Rr666366	regulatory region 666366	941 bp distal
Tssr78320	transcription start site region 78320	603 bp downstream
Tssr78321	transcription start site region 78321	1448 bp upstream