rs33574540 SNP Detail

Summary

• ID
  rs33574540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90865693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTACTTC AGAGGCCTTG
  ATTTTCTTTG CCACTCACTA CGGAAAGAGC CAGGGTCTGG GGCTGCATGA TCGTTATTAG
  GTATTAAAGA TGAGCAGAAG AGCTTAAACA AACTCTTAAA AATAGAAACA AGTTCAGATC
  CCTATCTGTG TAGGGTCTAA ATGAAAAGAC CATTCCACTC CTTGCTTAGT GCCCTAAAAA
  R
  TGTTTCCTTT GCAAGACAGA GAATGGTAGT AAGCTATCCA GTTGCGTAGA AGCCCAAAGG
  GTGTTTGGTG GCACCCACCA CCTTTACAGT GACATATTCC AGGGATGCGG CAGTTCCAGG
  AAGTTACCCT GATAGAGCCC CTCCAGTCGT CCCCAGACTT TCTGGCCGTA CAGCAGAAGT
  CTGTTGAGCT GACAGGCGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48329808	NES12186769	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33574540					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48329808	NES12186769	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90865693 () rs orientation: forward

Symbol	Name	Function Class
Epcip	exosomal polycystin 1 interacting protein	within coordinates
Gm60345	predicted gene, 60345	within coordinates
Rr519269	regulatory region 519269	78 bp proximal
Rr519270	regulatory region 519270	330 bp proximal
Tssr142072	transcription start site region 142072	290 bp downstream
Tssr142073	transcription start site region 142073	321 bp downstream
Tssr142074	transcription start site region 142074	337 bp downstream
Tssr142075	transcription start site region 142075	361 bp downstream