rs33574874 SNP Detail

Summary

• ID
  rs33574874
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:20207359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCTCACA CAGGTATCTA
  TCTAGGAATA GGCTAAACCT GCAGCTTAGC AGGAATGCCA GGTAACCTCC AAGACGATCA
  CAACAACCAC AAAACTCAAA CCCCAGTTAG AGTCCATACA AATCCTTAGA GCAAACTGTA
  CCCCGGGAGT GGAGCTTAGG AAACGGGTGG TGATGAGAAT ATTCCGAAGC ACACTTCCTT
  K
  CTCTTACAAG GCCTGGTGAG TGGTATTTTC ATCCAGGCAA GATCCTCCTT ACCCACCACC
  CCAGAAAGTA ACTGAGCATC TGCCAAGACT GAACTTCCCA CAGCGGCCTT ACCTACTAGA
  GACCAATCAC TGTTGGTGAG TTTAGACGCC GACTCTATCC AACCTCTCTC TTGTTGTCTC
  CTTCCATCTC TATCTCCTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46830146	NES10860287	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33574874					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46830146	NES10860287	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20207359 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13009	CpG island 13009	1213 bp proximal
Gyg1	glycogenin 1	within coordinates
Rr574068	regulatory region 574068	1390 bp proximal
Rr574069	regulatory region 574069	1891 bp proximal
Tssr841	transcription start site region 841	1861 bp downstream
Tssr32710	transcription start site region 32710	1895 bp downstream