rs33575207 SNP Detail

Summary

• ID
  rs33575207
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17692686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACTTCTC AGTCTCTTCT
  GGAAAGACCC TCGCAGGCAA TCCCCAAACC ACTCCTTAGT GCAATTGAGT TTGCCACCTG
  GAACTGTCAC AAACAGGCCC CACATCTACA AATTAACTCA GCCTGTTTTA CTATGGAAGA
  AACTACAAGT CCTTGTAGGA GCAGAAAGGT GTAACACCTC TCCACACCCA CTGTAAGGGC
  Y
  GCAGCCAACA CTCCCATATA TCAGGATGCA AAAGAAAAAG CATGATAAAT GAAGCCTGAA
  AGAATTTGAG AAACCTCTTT TCGTTCAGGT AATAACGTGA AGGTGACAGG CTGAGGGGAA
  AGGTCTCGCA AAGCCGGCAT GTCCACATTC TTGGCCTCTC CCTAACATTC TTTCTTCTGG
  AGGTTTTTGA GGTAGAGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47814800	NES11714441	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33575207					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814800	NES11714441	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17692686 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	988 bp proximal
Gm55211	predicted gene, 55211	739 bp upstream
Gm55212	predicted gene, 55212	1250 bp upstream
Rr626833	regulatory region 626833	within coordinates
Rr626834	regulatory region 626834	890 bp proximal
Rr626835	regulatory region 626835	1857 bp proximal
St7	suppression of tumorigenicity 7	893 bp upstream
Tssr55085	transcription start site region 55085	920 bp upstream
Tssr55086	transcription start site region 55086	1218 bp upstream
Tssr55087	transcription start site region 55087	1278 bp upstream
Tssr55088	transcription start site region 55088	1318 bp upstream
Tssr55089	transcription start site region 55089	1364 bp upstream
Tssr55090	transcription start site region 55090	1483 bp upstream