rs33575209 SNP Detail

Summary

• ID
  rs33575209
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17692707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CCTGTTTTAC TATGGAAGAA ACTACAAGTC CTTGTAGGAG
  CAGAAAGGTG TAACACCTCT CCACACCCAC TGTAAGGGCC GCAGCCAACA CTCCCATATA
  W
  CAGGATGCAA AAGAAAAAGC ATGATAAATG AAGCCTGAAA GAATTTGAGA AACCTCTTTT
  CGTTCAGGTA ATAACGTGAA GGTGACAGGC TGAGGGGAAA G                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47814802	NES11714442	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T	T		T	T	A	A	T	A	T
ss133020669	ENSMUSSNP6737680	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T						T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33575209					SNP	A	T	T	T	T	T	T	T	T	T	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814802	NES11714442	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17692707 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	967 bp proximal
Gm55211	predicted gene, 55211	718 bp upstream
Gm55212	predicted gene, 55212	1229 bp upstream
Rr626833	regulatory region 626833	within coordinates
Rr626834	regulatory region 626834	869 bp proximal
Rr626835	regulatory region 626835	1836 bp proximal
St7	suppression of tumorigenicity 7	872 bp upstream
Tssr55085	transcription start site region 55085	899 bp upstream
Tssr55086	transcription start site region 55086	1197 bp upstream
Tssr55087	transcription start site region 55087	1257 bp upstream
Tssr55088	transcription start site region 55088	1297 bp upstream
Tssr55089	transcription start site region 55089	1343 bp upstream
Tssr55090	transcription start site region 55090	1462 bp upstream
Tssr59909	transcription start site region 59909	1987 bp downstream