rs33575211 SNP Detail

Summary

• ID
  rs33575211
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17692873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTAATAAC GTGAAGGTGA CAGGCTGAGG GGAAAGGTCT
  CGCAAAGCCG GCATGTCCAC ATTCTTGGCC TCTCCCTAAC ATTCTTTCTT CTGGAGGTTT
  W
  TGAGGTAGAG TGTCCTGGAA TGAGGGGCTT CAAAGGAGGA GGGGGAAGGG AGAAAAGATC
  GAGCTTTCCA TGTTTTATAG TTTAGTCTGA GGGAGATGC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47814804	NES11714443	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A		T	T		A	A	T	A		T
ss133020675	ENSMUSSNP2014506	ENSEMBL	ENSEMBL_Sanger	f	SNP	T						A
ss321756051	CHEV_6_17642874	CHEVERUD	SCREENING_POP	f	SNP										T					A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33575211					SNP	T	T	T	T	T	A	A	T	T	T	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814804	NES11714443	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17692873 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	801 bp proximal
Gm55211	predicted gene, 55211	552 bp upstream
Gm55212	predicted gene, 55212	1063 bp upstream
Rr626833	regulatory region 626833	within coordinates
Rr626834	regulatory region 626834	703 bp proximal
Rr626835	regulatory region 626835	1670 bp proximal
Rr626836	regulatory region 626836	1841 bp proximal
St7	suppression of tumorigenicity 7	706 bp upstream
Tssr55085	transcription start site region 55085	733 bp upstream
Tssr55086	transcription start site region 55086	1031 bp upstream
Tssr55087	transcription start site region 55087	1091 bp upstream
Tssr55088	transcription start site region 55088	1131 bp upstream
Tssr55089	transcription start site region 55089	1177 bp upstream
Tssr55090	transcription start site region 55090	1296 bp upstream
Tssr59909	transcription start site region 59909	1821 bp downstream