rs33575212 SNP Detail

Summary

• ID
  rs33575212
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17693024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAAAGATC GAGCTTTCCA TGTTTTATAG TTTAGTCTGA
  GGGAGATGCA TTCTGATTTC TACAATGCAC CTTGAAGTAG GGGAATTTTG GTTTCCGGGA
  R
  CTGGCTTTGC TTTGGGGGAC ACACAAGGTA TGAAAAAAGG ACAGGAGCTC AGAGACACCT
  TGCTTCTGAG GCCTTTCCAA TTCCCTTCCA TTCAAGGCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47814806	NES11714444	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G		A	A		G	G	A	G		A
ss133020678	ENSMUSSNP2909961	ENSEMBL	ENSEMBL_Sanger	f	SNP	A						G
ss321756052	CHEV_6_17643025	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33575212					SNP	A	A	A	A	A	G	G	A	A	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814806	NES11714444	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17693024 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	650 bp proximal
Gm55211	predicted gene, 55211	401 bp upstream
Gm55212	predicted gene, 55212	912 bp upstream
Gm55213	predicted gene, 55213	1877 bp upstream
Rr626833	regulatory region 626833	81 bp distal
Rr626834	regulatory region 626834	552 bp proximal
Rr626835	regulatory region 626835	1519 bp proximal
Rr626836	regulatory region 626836	1690 bp proximal
St7	suppression of tumorigenicity 7	555 bp upstream
Tssr55085	transcription start site region 55085	582 bp upstream
Tssr55086	transcription start site region 55086	880 bp upstream
Tssr55087	transcription start site region 55087	940 bp upstream
Tssr55088	transcription start site region 55088	980 bp upstream
Tssr55089	transcription start site region 55089	1026 bp upstream
Tssr55090	transcription start site region 55090	1145 bp upstream
Tssr59909	transcription start site region 59909	1670 bp downstream