rs33575213 SNP Detail

Summary

• ID
  rs33575213
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17693208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTGGTTT CCGGGAACTG
  GCTTTGCTTT GGGGGACACA CAAGGTATGA AAAAAGGACA GGAGCTCAGA GACACCTTGC
  TTCTGAGGCC TTTCCAATTC CCTTCCATTC AAGGCAGCCA GCACGCCAGC ACAAGGTGTC
  CCATTTTGAG GTAATGCATT CTGAGCTTAA TCATGAGCAA TATAAAAATT ATAATAAGGT
  W
  AGCTGTTCAG TGATGAATTT TAATGTCTTG GTTATAGTTG GGAAAGTCTG CGTTTGCTTC
  ATTTAACATT GAATACATTA AAAGTCAAGA AACAGACTCG GAGCTAGCAC CTAAAGCCTT
  GTGTAAAATA TACTATTTTA TTTAACCGTG GGAAAATGTT CATAATGTGG TTTTATTTTT
  ATTCATTTTT CATTAGGTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47814808	NES11714406	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A	A	T	T	A	T	A
ss133020684	ENSMUSSNP4853014	ENSEMBL	ENSEMBL_Sanger	f	SNP	A						A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33575213					SNP	A	A	A	A	A	A	A	A	A	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814808	NES11714406	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17693208 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	466 bp proximal
Gm55211	predicted gene, 55211	217 bp upstream
Gm55212	predicted gene, 55212	728 bp upstream
Gm55213	predicted gene, 55213	1693 bp upstream
Rr626833	regulatory region 626833	265 bp distal
Rr626834	regulatory region 626834	368 bp proximal
Rr626835	regulatory region 626835	1335 bp proximal
Rr626836	regulatory region 626836	1506 bp proximal
St7	suppression of tumorigenicity 7	371 bp upstream
Tssr55085	transcription start site region 55085	398 bp upstream
Tssr55086	transcription start site region 55086	696 bp upstream
Tssr55087	transcription start site region 55087	756 bp upstream
Tssr55088	transcription start site region 55088	796 bp upstream
Tssr55089	transcription start site region 55089	842 bp upstream
Tssr55090	transcription start site region 55090	961 bp upstream
Tssr59909	transcription start site region 59909	1486 bp downstream