rs33575279 SNP Detail

Summary

• ID
  rs33575279
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33856492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTCCCACT TTGGGCTTCA TTTTCCTGCA ATCCAGTTTT
  CTTGTTTCTC CTCTCTCTGC TTCCTTTAAC CACTGTGAAC TTGAGAGGTC CTAAAACCCC
  W
  TACCTTCACA GCAACAGTGA TGTCCCTTCA GCCCAGGACT TAGACATCTT TTAATGCCAC
  CCACCCATAA GTCTGCTTAT CCCAGTTGAT GATGCTTTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss39552838	mCV24098531	ABI	CRAMUS_MOUSE	f	SNP		A	T					A		T
ss62686883	NES17316517	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	A	T		T	T	A	A		T	A	T	T
ss145493323	ENSMUSSNP641433	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T							T
ss325366937	CHEV_17_33774463	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs33575279					SNP	A	A	T	T	T	A	T	A	T	T	A	A	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62686883	NES17316517	PERLEGEN	MM_PANEL	f	SNP	A/T
ss159834555	UOL_MMUSEQ_3116	UOL_CGR	Mmu17_30637692_36837814	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33856492 () rs orientation: forward

Symbol	Name	Function Class
Gm20507	predicted gene 20507	within coordinates
Pram1	PML-RAR alpha-regulated adaptor molecule 1	538 bp upstream
Rr392542	regulatory region 392542	1975 bp upstream
Tssr143785	transcription start site region 143785	282 bp upstream
Tssr143786	transcription start site region 143786	303 bp upstream
Tssr143787	transcription start site region 143787	571 bp upstream
Tssr143788	transcription start site region 143788	602 bp upstream
Tssr143789	transcription start site region 143789	612 bp upstream