rs33576216 SNP Detail

Summary

• ID
  rs33576216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17693367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAGCTTA ATCATGAGCA
  ATATAAAAAT TATAATAAGG TAAGCTGTTC AGTGATGAAT TTTAATGTCT TGGTTATAGT
  TGGGAAAGTC TGCGTTTGCT TCATTTAACA TTGAATACAT TAAAAGTCAA GAAACAGACT
  CGGAGCTAGC ACCTAAAGCC TTGTGTAAAA TATACTATTT TATTTAACCG TGGGAAAATG
  Y
  TCATAATGTG GTTTTATTTT TATTCATTTT TCATTAGGTT CTGATGAAGT ACGCCAAAGT
  TAAACTAGGG AATTGCTTAT ATGTTAAAAA CAAAAACAAA ACGAGTAAAG ACTTGTTTGA
  ATGGCGATCA CTTGGAAAAT AGGAAGAAAA AGAAATACGT ATGTTGTCAG TTTCTCTGGA
  AAACCCTTCA CCGTGCTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47814814	NES11714412	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C		T	T	C	C	T	C	T
ss133020693	ENSMUSSNP2962467	ENSEMBL	ENSEMBL_Sanger	f	SNP	T						T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33576216					SNP	T	T	T	T	T	C	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814814	NES11714412	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17693367 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	307 bp proximal
Gm55211	predicted gene, 55211	58 bp upstream
Gm55212	predicted gene, 55212	569 bp upstream
Gm55213	predicted gene, 55213	1534 bp upstream
Gm55215	predicted gene, 55215	1986 bp upstream
Rr626833	regulatory region 626833	424 bp distal
Rr626834	regulatory region 626834	209 bp proximal
Rr626835	regulatory region 626835	1176 bp proximal
Rr626836	regulatory region 626836	1347 bp proximal
St7	suppression of tumorigenicity 7	212 bp upstream
Tssr55085	transcription start site region 55085	239 bp upstream
Tssr55086	transcription start site region 55086	537 bp upstream
Tssr55087	transcription start site region 55087	597 bp upstream
Tssr55088	transcription start site region 55088	637 bp upstream
Tssr55089	transcription start site region 55089	683 bp upstream
Tssr55090	transcription start site region 55090	802 bp upstream
Tssr59909	transcription start site region 59909	1327 bp downstream