rs33576219 SNP Detail

Summary

• ID
  rs33576219
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17693636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATTGCTT ATATGTTAAA
  AACAAAAACA AAACGAGTAA AGACTTGTTT GAATGGCGAT CACTTGGAAA ATAGGAAGAA
  AAAGAAATAC GTATGTTGTC AGTTTCTCTG GAAAACCCTT CACCGTGCTG TTTGGGAAAA
  ACAAAACAAA TAGCAGAAGC TAGTACAAAG GGAACCAAAA TTTCTCTTCA GGCCTAATGA
  R
  CAGGAGTGCA TCTCTTCTAG CTCGTCTGGA TTTCATTGAT ACCTTTAAGC CCCAGTCCTG
  GGAGACACAG CTTTAAGACT CCTGGAAACC TTGTTTACGT CCTGGAAATC TTGATTGCAA
  CCGAATTCTG ACTCCACTTT AAGGTAGACC TAGGAACGCT TTGGGCCTCA GTTTCCCTCC
  GTCTATCACC CCAGGACCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47814818	NES11714416	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A		G	G	A	A	G	A	G
ss133020696	ENSMUSSNP3164375	ENSEMBL	ENSEMBL_Sanger	f	SNP							G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33576219					SNP	G	G	G	G	G	A	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814818	NES11714416	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17693636 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	38 bp proximal
Gm55211	predicted gene, 55211	80 bp downstream
Gm55212	predicted gene, 55212	300 bp upstream
Gm55213	predicted gene, 55213	1265 bp upstream
Gm55215	predicted gene, 55215	1717 bp upstream
Rr626833	regulatory region 626833	693 bp distal
Rr626834	regulatory region 626834	within coordinates
Rr626835	regulatory region 626835	907 bp proximal
Rr626836	regulatory region 626836	1078 bp proximal
St7	suppression of tumorigenicity 7	within coordinates
Tssr55085	transcription start site region 55085	19 bp downstream
Tssr55086	transcription start site region 55086	268 bp upstream
Tssr55087	transcription start site region 55087	328 bp upstream
Tssr55088	transcription start site region 55088	368 bp upstream
Tssr55089	transcription start site region 55089	414 bp upstream
Tssr55090	transcription start site region 55090	533 bp upstream
Tssr59909	transcription start site region 59909	1058 bp downstream