rs33576537 SNP Detail

Summary

• ID
  rs33576537
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:35884474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTACT TGCATAGAGC CCCCTCCTCC
  Y
  TGCACGGTCC TCCCTCCACG AGCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45795915	mCV22744168	ABI	CRAMUS_MOUSE	f	SNP		T	C
ss148227233	ENSMUSSNP6233315	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss321510497	CHEV_5_36069779	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33576537					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35884474 () rs orientation: forward

Symbol	Name	Function Class
Rr609994	regulatory region 609994	493 bp proximal
Rr609995	regulatory region 609995	1406 bp proximal
Sh3tc1	SH3 domain and tetratricopeptide repeats 1	within coordinates
Tssr45957	transcription start site region 45957	1278 bp upstream
Tssr50711	transcription start site region 50711	1877 bp downstream
Tssr50712	transcription start site region 50712	1892 bp downstream
Tssr50713	transcription start site region 50713	1918 bp downstream
Tssr50714	transcription start site region 50714	1958 bp downstream