rs33576826 SNP Detail

Summary

• ID
  rs33576826
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:45901785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGAACTC AAGGGGGTAC
  ACAGAATGGG AACACATGGA TACCAAGTAA ATCCAGGGTG AGGAGAAAGA TTGAGATAAA
  GTGCAAAAGA ACAATAAAAA ATGGTGAACT GAGAATCGTG GCAAAGTGAC ATGAAGGAAA
  CCAAGAAGAA AAAGGAAAAG CAACAACGGC AAAAAGACAG TGATGGCTTT ACAGAGGACA
  R
  TGGTCGTTTT ATAGAAAACT CAAGAGAAAA GAGCAGAGAA CAGATCCCAG ATCTGCAAGG
  TTACTATAAC CCCAGTAACC CCAAAAACCC TGGTCCTCTT TAATATTTTC TTTACCTTGT
  TTTGTTTTGT TGAAGATAGA ATCTCAGGCA TGTGGGACAT TGGGCAATCA TGCTATCAAA
  TGAGTTACAT TCTCATCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47315366	NES11066067	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33576826					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47315366	NES11066067	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:45901785 () rs orientation: forward

Symbol	Name	Function Class
Gm57168	predicted gene, 57168	within coordinates
Rr371219	regulatory region 371219	1277 bp downstream
Rr410559	regulatory region 410559	1934 bp distal
Rr410560	regulatory region 410560	425 bp proximal
Rr410561	regulatory region 410561	1882 bp proximal