rs33577116 SNP Detail

Summary

• ID
  rs33577116
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:45903202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCATTCTGC AGCAGCCCAG
  GGCTCACTCC CCTTCCCCTA GCACTAGAAT GGCACTTAAT GAGGACATTC TGAGAAGACA
  TCCTCCCCTC CCTTAAACAA TTACAATTAC AAGAAATATT GGAAACCATC CCACTAAAGA
  AAAAGAAAAG AAAATTATGA CAAAGTAACA ACTTATCAGA AACTGCTAAG TACTTACATG
  K
  AAAATAAGAA CTGTCATAAT GCCTCAATGT TCTAGATAAA ACACAAGATC AGCAGCCCAT
  GTCATAAAGC CTCAATGTTC CATTTAAAAC ACAAGATCAG CAGCCCATCG TGGCTCTTAA
  AATCAAACTC ATAGAGCCAG GTGTGATGTT ACACAGCTGT TTCCCTAGTG TCACTCTAGA
  ATGCTTTCCT TTGTTTCTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47315426	NES11065902	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33577116					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47315426	NES11065902	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:45903202 () rs orientation: forward

Symbol	Name	Function Class
Gm57168	predicted gene, 57168	within coordinates
Rr410560	regulatory region 410560	971 bp distal
Rr410561	regulatory region 410561	465 bp proximal
Rr410562	regulatory region 410562	1372 bp proximal