rs33577578 SNP Detail

Summary

• ID
  rs33577578
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:45902413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGAAGAG GGCACCAGAT
  TTCATTATAG GTGGTTATGA GCCACCATGT GGTTGCTGGG AATTGAACTC AGGACCTCTG
  AAAGAGCAAC CGGTGCTCTT AACCTCTAAA CCATCTCTCT AGCCCCAGTG AGGGCATTTT
  CAAAAAGATA TGGATATGTA GTTAAATTGC AACAATGATT AGGACATTAA AGGGGCAAAC
  R
  TGAACAAGAT GAATGTTGCT ACTGAAGAAT GAAGAGAGAT CTCAAGTGAA GGCAGAATCG
  GTTCTTTTAT TGCTGTTACT GTTTGTTTGT GACAGGGTCT TGCTATATAA CCTCGTGCTG
  GCCATAAACA CCTAATCTCG TTGCAGGTGT GTGCTGCCAG GCTCTCTGTA CAGCAACTAA
  ATCTTTCATT CTTTTTTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47315378	NES11065886	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33577578					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47315378	NES11065886	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:45902413 () rs orientation: forward

Symbol	Name	Function Class
Gm57168	predicted gene, 57168	within coordinates
Rr371219	regulatory region 371219	1905 bp downstream
Rr410560	regulatory region 410560	182 bp distal
Rr410561	regulatory region 410561	1254 bp proximal