rs33577681 SNP Detail

Summary

• ID
  rs33577681
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91067441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCCCTCAG GGCTGTCCCG CCCCTTGGAA CTGCCCCGCC
  CCCTCGGGAT TGCCACAGTA GGGGGCTGTC TTGCCCCCGG AACTGCCCCG GACTGCCCCA
  C
  CCCCTCGGGC ACGGCCCGCC CCCGGCCGCT CCTCCTCTTC CGGAGTAACG TGTGCAGCTC
  ACAGGGAGGG TTTTTTATTT TAACTCCCTA GGAGCTGGG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45295895	mCV24870082	ABI	CRAMUS_MOUSE	f	SNP	C	C
ss320392008	CHEV_2_91077253	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs33577681					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91067441 () rs orientation: forward

Symbol	Name	Function Class
A330069E16Rik	RIKEN cDNA A330069E16 gene	50 bp upstream
Cpgi11902	CpG island 11902	within coordinates
Ddb2	damage specific DNA binding protein 2	114 bp upstream
Rr397126	regulatory region 397126	within coordinates
Rr560675	regulatory region 560675	1476 bp distal
Rr560676	regulatory region 560676	within coordinates
Rr560677	regulatory region 560677	50 bp proximal
Rr560678	regulatory region 560678	181 bp proximal
Rr560679	regulatory region 560679	498 bp proximal
Rr560680	regulatory region 560680	884 bp proximal
Tssr18884	transcription start site region 18884	14 bp upstream
Tssr18885	transcription start site region 18885	76 bp upstream
Tssr25176	transcription start site region 25176	241 bp upstream
Tssr25177	transcription start site region 25177	224 bp upstream
Tssr25178	transcription start site region 25178	175 bp upstream
Tssr25179	transcription start site region 25179	131 bp upstream
Tssr25180	transcription start site region 25180	107 bp upstream