rs33577965 SNP Detail

Summary

• ID
  rs33577965
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:45903454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCCCATG TCATAAAGCC
  TCAATGTTCC ATTTAAAACA CAAGATCAGC AGCCCATCGT GGCTCTTAAA ATCAAACTCA
  TAGAGCCAGG TGTGATGTTA CACAGCTGTT TCCCTAGTGT CACTCTAGAA TGCTTTCCTT
  TGTTTCTGAT CATAGACCAT GTTTCAAATG AAACAACTTT CCTTTTTTAA ACTTATTTTT
  Y
  AAAAAGGCAA CAAATAAGGA GAGAAAAAAA AAACCACACA CACAAACACA CACACTCACA
  CTCGCCAAAA TTTACCAGAT CGAAAGACTA TACAACTCAG CAAACTTCTA TACAGGAATA
  ATTTTAAAAC ATTAGGAAAG TTTTTGCCAT GCAACTGAGA TAAAATAATG AAAAATGTTT
  TAGGCAGCAT CAGGACCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47315435	NES11065907	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs33577965					SNP	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47315435	NES11065907	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:45903454 () rs orientation: forward

Symbol	Name	Function Class
Gm57168	predicted gene, 57168	within coordinates
Rr410560	regulatory region 410560	1223 bp distal
Rr410561	regulatory region 410561	213 bp proximal
Rr410562	regulatory region 410562	1120 bp proximal