rs33578156 SNP Detail

Summary

• ID
  rs33578156
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84658808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTCTTGTT TTTCACGATG GGGCTTCTCT GTGTTGCCTT
  GGTTGTCAGC TTAATCTGTA TAGACCAGGC TGGCCTCACT CTCAGAGATC CACCTGTCTC
  W
  TTCTCTTGGG TGCTGGGATT AAAGGTGTGC ACACTCGGCC TAAATTATAC TTTAACTCTG
  TGTTAGGCAT TTGCAAAGCA TTTTATATAT ATTATCACT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45295990	mCV23821580	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	T
ss146834939	ENSMUSSNP3917587	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss320372124	CHEV_2_84668621	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33578156					SNP	A	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84658808 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11868	CpG island 11868	1314 bp distal
Cpgi11869	CpG island 11869	621 bp distal
Gm75309	predicted gene, 75309	1628 bp upstream
Rr397100	regulatory region 397100	1348 bp downstream
Timm10	translocase of inner mitochondrial membrane 10	within coordinates
Tssr18699	transcription start site region 18699	1397 bp downstream
Tssr18700	transcription start site region 18700	1366 bp downstream