rs33578537 SNP Detail

Summary

• ID
  rs33578537
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:20208957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCACCCGGCT GCTGAGGCCT AAAAATAGGA TCAGTGCAGC
  GGCCAGAGCA GGGCCGCAAC CCGGTGTTTC CGTAGGGCGC CTGCTGCTCC CCATGGCAGG
  M
  GCACCTCCGG GCTCCGTGCG ACCCCGGTGC GTCCGGCGCC CGCCCCACCC CGCCTGGCCT
  TCCCCGGATG CGGGAGACGG AAGCCACCGC TCTGCAGCGC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss46830194	NES10860314	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs33578537					SNP	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46830194	NES10860314	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20208957 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13009	CpG island 13009	within coordinates
Gyg1	glycogenin 1	Intron
Rr574068	regulatory region 574068	187 bp distal
Rr574069	regulatory region 574069	293 bp proximal
Rr574070	regulatory region 574070	450 bp proximal
Tssr841	transcription start site region 841	263 bp downstream
Tssr32710	transcription start site region 32710	297 bp downstream