rs33578539 SNP Detail

Summary

• ID
  rs33578539
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:20209043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCCATGT AGCAGCACCC
  GGCTGCTGAG GCCTAAAAAT AGGATCAGTG CAGCGGCCAG AGCAGGGCCG CAACCCGGTG
  TTTCCGTAGG GCGCCTGCTG CTCCCCATGG CAGGAGCACC TCCGGGCTCC GTGCGACCCC
  GGTGCGTCCG GCGCCCGCCC CACCCCGCCT GGCCTTCCCC GGATGCGGGA GACGGAAGCC
  R
  CCGCTCTGCA GCGCGGCTCG GTTAGCAGCC GGAGCCGCTC TCCACGGTTC GCGAGCTACC
  CGGAGCTTCC CGGGCTTAGG GGCGGCGACG TCGCGGGACC CGGTTACGCG GGGCGTACCT
  GTCATAGTGT GGCCGGGTGG GTCGGAGGAG CCGGGCGCCG GTAGGTGACC GCGGTCAGCA
  GGGAGGGCCA GCAGGGAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46830197	NES10860317	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33578539					SNP	A	A	A	A	A	A	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46830197	NES10860317	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20209043 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13009	CpG island 13009	within coordinates
Gyg1	glycogenin 1	within coordinates
Rr574068	regulatory region 574068	273 bp distal
Rr574069	regulatory region 574069	207 bp proximal
Rr574070	regulatory region 574070	364 bp proximal
Tssr841	transcription start site region 841	177 bp downstream
Tssr32710	transcription start site region 32710	211 bp downstream