rs33578541 SNP Detail

Summary

• ID
  rs33578541
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:20209119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTTTCCG TAGGGCGCCT
  GCTGCTCCCC ATGGCAGGAG CACCTCCGGG CTCCGTGCGA CCCCGGTGCG TCCGGCGCCC
  GCCCCACCCC GCCTGGCCTT CCCCGGATGC GGGAGACGGA AGCCACCGCT CTGCAGCGCG
  GCTCGGTTAG CAGCCGGAGC CGCTCTCCAC GGTTCGCGAG CTACCCGGAG CTTCCCGGGC
  K
  TAGGGGCGGC GACGTCGCGG GACCCGGTTA CGCGGGGCGT ACCTGTCATA GTGTGGCCGG
  GTGGGTCGGA GGAGCCGGGC GCCGGTAGGT GACCGCGGTC AGCAGGGAGG GCCAGCAGGG
  AGGGCGGGAG TCCGCAGCCC GCCGCTCTTA TAGCGGCCGT CACGTGGCCG CGCAGGCTCA
  AGCCCAGGCC GCATCCTCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46830200	NES10860318	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33578541					SNP	T	T	T	T	T	T	G	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46830200	NES10860318	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20209119 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13009	CpG island 13009	within coordinates
Gyg1	glycogenin 1	within coordinates
Rr574068	regulatory region 574068	349 bp distal
Rr574069	regulatory region 574069	131 bp proximal
Rr574070	regulatory region 574070	288 bp proximal
Tssr841	transcription start site region 841	101 bp downstream
Tssr32710	transcription start site region 32710	135 bp downstream