rs33578670 SNP Detail

Summary

• ID
  rs33578670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:45903825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATGTTT TAGGCAGCAT
  CAGGACCCAG CACCCTCTGT GGGATGTTGC TTGGTGGTCT GTGGTGAATG AATCTCTTTT
  AGGCCTTGTG TAAGGAAGCT GGTAAAGACT GCAGATGTTG CTCATTCAAG TGTGGCTTTT
  GTGCATGAAT CCTGCTCTCC AGTGAGGAGT GAGGACATGG CTCTCACATG CCTGTGGTTC
  Y
  GACACTCTCT TCAGTTGTCC CCACATCACC CCAAGGCATG TCTGACAAGC TGGAAGAAGG
  CCAATAGCGA AACAAACAGC ATAGGCCAAG GAGACTTGAA CCCAAGGGAA AGAAAGGCAT
  GTCAGCCGAG TCCACTCACT TTAAGTAAGG GGAAGTAAGG CAGTGAGGAA CAGAGGCACC
  AAGAATGAAG GTCAAAAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47315450	NES11065923	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33578670					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47315450	NES11065923	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:45903825 () rs orientation: forward

Symbol	Name	Function Class
Gm57168	predicted gene, 57168	within coordinates
Rr410560	regulatory region 410560	1594 bp distal
Rr410561	regulatory region 410561	within coordinates
Rr410562	regulatory region 410562	749 bp proximal
Rr410563	regulatory region 410563	1651 bp proximal