rs33579098 SNP Detail

Summary

• ID
  rs33579098
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:72021062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG AGGAAGGGAG TAGAGGGCAC
  R
  AGCTGGGGAG AGGAGGAAGT GGGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46293110	mCV24076221	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	G
ss145150814	ENSMUSSNP5668271	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
ss322704859	CHEV_8_74092317	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33579098					SNP	G	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:72021062 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20548	CpG island 20548	941 bp proximal
Cpgi20549	CpG island 20549	1843 bp proximal
Nxnl1	nucleoredoxin-like 1	1817 bp upstream
Rr400934	regulatory region 400934	1845 bp upstream
Rr665115	regulatory region 665115	within coordinates
Slc27a1	solute carrier family 27 (fatty acid transporter), member 1	464 bp upstream
Tssr77870	transcription start site region 77870	448 bp upstream
Tssr77871	transcription start site region 77871	539 bp upstream
Tssr77872	transcription start site region 77872	1239 bp upstream
Tssr81733	transcription start site region 81733	1806 bp upstream
Tssr81734	transcription start site region 81734	1792 bp upstream
Tssr81735	transcription start site region 81735	1786 bp upstream
Tssr81736	transcription start site region 81736	1778 bp upstream
Tssr81737	transcription start site region 81737	1766 bp upstream
Tssr81738	transcription start site region 81738	1045 bp downstream