rs33579177 SNP Detail

Summary

• ID
  rs33579177
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45867950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGA TCTCCCTTTT CTCCCTTAGG
  Y
  CCAGCTGGAA TCAGGTGCAG CTGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39553255	mCV25142716	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					T		C
ss60259840	NES15755752	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	C	C	C		C	C	C	C		T
ss145694962	ENSMUSSNP6159242	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
ss325403389	CHEV_17_45693973	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33579177					SNP	T	T	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259840	NES15755752	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45867950 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9193	CpG island 9193	708 bp distal
Nfkbie	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	within coordinates
Rr370254	regulatory region 370254	1285 bp upstream
Rr405302	regulatory region 405302	1251 bp downstream
Rr527428	regulatory region 527428	1303 bp distal
Rr527429	regulatory region 527429	within coordinates
Tssr144787	transcription start site region 144787	1351 bp downstream
Tssr144788	transcription start site region 144788	1310 bp downstream
Tssr144789	transcription start site region 144789	1278 bp downstream
Tssr144790	transcription start site region 144790	1225 bp downstream
Tssr144791	transcription start site region 144791	1207 bp downstream
Tssr144792	transcription start site region 144792	1124 bp downstream
Tssr144793	transcription start site region 144793	754 bp downstream