rs33579542 SNP Detail

Summary

• ID
  rs33579542
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:45903963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGCATGA ATCCTGCTCT
  CCAGTGAGGA GTGAGGACAT GGCTCTCACA TGCCTGTGGT TCCGACACTC TCTTCAGTTG
  TCCCCACATC ACCCCAAGGC ATGTCTGACA AGCTGGAAGA AGGCCAATAG CGAAACAAAC
  AGCATAGGCC AAGGAGACTT GAACCCAAGG GAAAGAAAGG CATGTCAGCC GAGTCCACTC
  W
  CTTTAAGTAA GGGGAAGTAA GGCAGTGAGG AACAGAGGCA CCAAGAATGA AGGTCAAAAG
  ATATAAAACA TGTTCTCCTG AAAGTGGCCC CCTGAACAGC ATGGCTACTG CCAATGCTTA
  CATTCCACCA CAAAATAGTC ACTTTGGAAG GAGGGGTCCA GCTCAGCACA TTCCAACCTC
  GAAAGCTAAA AGAATCAGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47315462	NES11065933	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33579542					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47315462	NES11065933	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:45903963 () rs orientation: forward

Symbol	Name	Function Class
Gm57168	predicted gene, 57168	within coordinates
Rr410560	regulatory region 410560	1732 bp distal
Rr410561	regulatory region 410561	within coordinates
Rr410562	regulatory region 410562	611 bp proximal
Rr410563	regulatory region 410563	1513 bp proximal