TTCCAGGGCC TGGGAAAGAA AGGGGGCAGA GCTGTGTGGC CTGTGGCAGG AAAAGGAAGG GTAATAAACT TTCAATTAAC AGAGACCTCT CGAAAGCCAC GCCAGTTACA GTATTCATTT AAACTTTTTA AACTGAAGAG AACGGTTTTG CCAAATATTT AGAATCTTAC CACTGGTTTT AATCAGGTAG TTAAGACCCT Y TTACCAAGTC AAGGGCATAG GAATCCCATA ATGCCATATA CTTGTAGGTA GGAGAAACTC AGGCTCAGAA AGTTAAGTTA CTTTGCTATG ATAATAAGCC TTAAGAGGAG AGGTTTGTTT CAGATCAACA CACTCCCATA GAAAGCCCCA GTGCCTTTAG CATACTGGTT CTGGATAAAG GGTAGTAAGT TCCCGTAATT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46830206 | NES10860321 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | C | T | T | T | C | T | T | C |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
||||
rs33579547 | SNP | T | T | T | T | T | T | C | T | T | T | C | T | T | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46830206 | NES10860321 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr3:20209596 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13009 | CpG island 13009 | 159 bp distal | ||||||
Gyg1 | glycogenin 1 | 368 bp upstream | ||||||
Rr574068 | regulatory region 574068 | 826 bp distal | ||||||
Rr574069 | regulatory region 574069 | within coordinates | ||||||
Rr574070 | regulatory region 574070 | 168 bp distal | ||||||
Tssr841 | transcription start site region 841 | 360 bp upstream | ||||||
Tssr32710 | transcription start site region 32710 | 310 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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