rs33579550 SNP Detail

Summary

• ID
  rs33579550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:20209768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTTTTAA TCAGGTAGTT
  AAGACCCTTT TACCAAGTCA AGGGCATAGG AATCCCATAA TGCCATATAC TTGTAGGTAG
  GAGAAACTCA GGCTCAGAAA GTTAAGTTAC TTTGCTATGA TAATAAGCCT TAAGAGGAGA
  GGTTTGTTTC AGATCAACAC ACTCCCATAG AAAGCCCCAG TGCCTTTAGC ATACTGGTTC
  Y
  GGATAAAGGG TAGTAAGTTC CCGTAATTCT GCTTAGGTAA TTCAGTTGTT TCGGTTCATC
  TATTTCACAA ATCTTGAAGG CCAATTTGTC ATTTCAGGGG GGAAGTTGAG AAATACTTTT
  CTAATGTAGC CTGCACCTTG CAAACACAAT TCTCCCTCCC ACCCACTCGG CCCAAGCACA
  GCAATGGTGG ATCGGCGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46830209	NES10860322	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	T	C		T	T	C
ss134671656	ENSMUSSNP426975	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T										C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33579550					SNP	T	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46830209	NES10860322	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20209768 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13009	CpG island 13009	331 bp distal
Gyg1	glycogenin 1	540 bp upstream
Rr574068	regulatory region 574068	998 bp distal
Rr574069	regulatory region 574069	within coordinates
Rr574070	regulatory region 574070	340 bp distal
Tssr841	transcription start site region 841	532 bp upstream
Tssr32710	transcription start site region 32710	482 bp upstream