rs33579553 SNP Detail

Summary

• ID
  rs33579553
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:20209901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGAGGT TTGTTTCAGA
  TCAACACACT CCCATAGAAA GCCCCAGTGC CTTTAGCATA CTGGTTCTGG ATAAAGGGTA
  GTAAGTTCCC GTAATTCTGC TTAGGTAATT CAGTTGTTTC GGTTCATCTA TTTCACAAAT
  CTTGAAGGCC AATTTGTCAT TTCAGGGGGG AAGTTGAGAA ATACTTTTCT AATGTAGCCT
  R
  CACCTTGCAA ACACAATTCT CCCTCCCACC CACTCGGCCC AAGCACAGCA ATGGTGGATC
  GGCGCTCTGT AAATCTTTTC TCAATAATGA ACGGTGACAA TATCAACTCA AAGCAGGAAA
  CAGATACTGA AGAATAGGGA AAGACAGCAC TGCAATCCTC AATATAGTCC TCAACTTACA
  GTCGTTGCTG AACTTCCAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46830212	NES10860323	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A		G	G	A
ss134671659	ENSMUSSNP4568029	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33579553					SNP	G	G	G	G	G	G	G	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46830212	NES10860323	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20209901 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13009	CpG island 13009	464 bp distal
Gyg1	glycogenin 1	673 bp upstream
Rr574068	regulatory region 574068	1131 bp distal
Rr574069	regulatory region 574069	68 bp distal
Rr574070	regulatory region 574070	473 bp distal
Tssr841	transcription start site region 841	665 bp upstream
Tssr32710	transcription start site region 32710	615 bp upstream