rs33579928 SNP Detail

Summary

• ID
  rs33579928
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:45902705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGGTCTT GCTATATAAC
  CTCGTGCTGG CCATAAACAC CTAATCTCGT TGCAGGTGTG TGCTGCCAGG CTCTCTGTAC
  AGCAACTAAA TCTTTCATTC TTTTTTAAAA TGTATTTTAA TTTTGGATAG TTTTTTGAGA
  GGAAGAAAAC AAGATACAGA ATAAAAAGAC AAATCACTGA ACAAAATGTT AGCAGGGAAA
  S
  GAAGACTCTC AAAGAAAAGC CAATGGGGTG GCAGGAAATA GAGACTGCTG GAAGCAAATA
  AAATAAAATA AATGAACTTT ACTTTATCTG AGACTTAAGA GGTAAAGAAT ATTGCATACT
  TAGAACAAAG AGATGAGTAG GATAAATATT ATAACCCCCG AATTACTGAT ATTAGAGAGA
  CTTCAGTGAT GTGTACAGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47315408	NES11065896	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33579928					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47315408	NES11065896	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:45902705 () rs orientation: forward

Symbol	Name	Function Class
Gm57168	predicted gene, 57168	within coordinates
Rr410560	regulatory region 410560	474 bp distal
Rr410561	regulatory region 410561	962 bp proximal
Rr410562	regulatory region 410562	1869 bp proximal