rs33580338 SNP Detail

Summary

• ID
  rs33580338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:20210305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTTCATA TTAGTTCAAA
  AGCATTATCC ATCATCAGAA ACCACTTTGA ATTTTGATAT TTCATTGGTT AGTGATATGC
  AATATGGTAT TCTTCCATGA TGCCGAACAC CTGCCCCAGT CCCCAGGCAG CAGTGAGAGC
  ATTAAGGTAA ACACATAAAT GCTACTCTTT TGCTAGGCTA TGGCACTGGG TACTAGATGT
  R
  GCAGAAGATT CTATATATTC ACAGAGGGTC TATAAAGATA CAGTCCCACA CCCATCATCC
  TAGGCCATAT CTACACCATT GCTCCTTGGC CTGTGGGCTT AGACCTCCTC CACTAGACTC
  AACCAGTACA AGTTAAAAAG TCAATTTTTG TTCTTTAGTC CAGGTCTCCT AGAGGCATCA
  TTTGAAAACT ACACTCTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46830218	NES10860107	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33580338					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46830218	NES10860107	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20210305 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13009	CpG island 13009	868 bp distal
Gyg1	glycogenin 1	1077 bp upstream
Rr574068	regulatory region 574068	1535 bp distal
Rr574069	regulatory region 574069	472 bp distal
Rr574070	regulatory region 574070	877 bp distal
Tssr841	transcription start site region 841	1069 bp upstream
Tssr32710	transcription start site region 32710	1019 bp upstream