rs33580500 SNP Detail

Summary

• ID
  rs33580500
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:18119865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTA CTCATCCTGT TGTATCTGTG
  Y
  TCCACCCTTG CAACGCCCAC AAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39553427	mCV22802867	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	T
ss145228023	ENSMUSSNP1939694	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss325312432	CHEV_17_18036567	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33580500					SNP	T	T	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:18119865 () rs orientation: forward

Symbol	Name	Function Class
Rr329600	regulatory region 329600	within coordinates
Rr336961	regulatory region 336961	within coordinates
Rr343850	regulatory region 343850	1002 bp proximal
Rr343851	regulatory region 343851	1161 bp proximal
Tssr142835	transcription start site region 142835	24 bp upstream