rs33580902 SNP Detail

Summary

• ID
  rs33580902
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136516709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCAGTGGAT GTCTCTATCT CCTACTCGCA
  GGCTCTCCCT CCGCGCTCGC CCTTTCTTAG GCTCTGCTGT GTTTGGGGAC TTCAGTGACA
  TCAAGGACAG GACAGAGCTT TAGCTCTCCA TCCTCTGTCC TCTGCCGGTG GTGCTCATCT
  S
  TACAGACCGC TCTGACCTCT GCCTGAGCCA GGACCTGGGA GTTGCAGACC ACCCAGACTC
  CCCGCGAGCA CCAGATGGCA GTTGTAGTCG GCACTTCCCA TGTGGCATAA TTTTGTGGAA
  TTTACCTCGC CTCATCTGGC TCTGATTATT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49503619	NES12859860	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	G	G	G	C	C	G	C		C	G	C	C		C
ss145559103	ENSMUSSNP5154909	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						C
ss319996221	CHEV_1_138485548	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33580902					SNP	C	G	G	G	G	G	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49503619	NES12859860	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136516709 () rs orientation: forward

Symbol	Name	Function Class
4933409D19Rik	RIKEN cDNA 4933409D19 gene	within coordinates
Gm57131	predicted gene, 57131	within coordinates
Rr419475	regulatory region 419475	542 bp distal
Rr419476	regulatory region 419476	within coordinates