rs33581345 SNP Detail

Summary

• ID
  rs33581345
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136508510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCCGTTT CTGTGTAAGA
  AAAATCTGAG ATACGCCCGA GTTCTTCCTG TCCTCTCTTC AGCCCCTACT TCTTTGATTC
  TCTTATAAAC AGAGGGAAAT GTATTATATA TAAATAAATG TAGAGTGGTG CTGAGAAAAA
  CCTGGAAGCG GGTCTGGGAG TGGGTAAGAG CACTCGCTAT AGCTTGAGGG CTGGAGTCCA
  W
  ATTCCCAAGA CCCATTTTTA GAAGCTGGAC ATGTTTAGAT GCATCTATAA AACACCCCTC
  CAAGTGCTTG AGAGAGTGAG GGGCTGGAAG ACAGCAGCAT AGCTCCAGGT TCTTCGAGCA
  ACTTTGTCTC AAGAGCAAAT AAGAGAGAGT GATTCAGCAG TGGACTTGAC TTCTTCCTCT
  GGCCTCCTAC AACACCTGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49503711	NES12860447	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	A	T	T	A	A	T	T	A	A
ss145558982	ENSMUSSNP3848985	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33581345					SNP	A	T	T	T	T	A	T	T	A	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49503711	NES12860447	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136508510 () rs orientation: forward

Symbol	Name	Function Class
4933409D19Rik	RIKEN cDNA 4933409D19 gene	within coordinates
Gm33994	predicted gene, 33994	193 bp upstream
Gm57131	predicted gene, 57131	within coordinates
Rr367011	regulatory region 367011	1059 bp downstream
Rr419472	regulatory region 419472	1306 bp distal
Rr419473	regulatory region 419473	1094 bp distal
Rr419474	regulatory region 419474	1155 bp proximal
Tssr9072	transcription start site region 9072	1121 bp downstream
Tssr9073	transcription start site region 9073	1099 bp downstream
Tssr13942	transcription start site region 13942	225 bp upstream
Tssr13943	transcription start site region 13943	210 bp upstream
Tssr13944	transcription start site region 13944	183 bp upstream