rs33581347 SNP Detail

Summary

• ID
  rs33581347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136508352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTAGAGGG CTGGCCGTGG
  CTGGCAGAGA TGGCATTTGG AGGCATCACC CGCATACTTT CCTGAATCCA TGGGAGAATC
  CTACCTGTAC CAGGTCTCTG CTGCTTTGTA TTCACCAAGT GGAGACACTG AGGTGGTACA
  ATCTCATCAG CTCAGCAAGC TTCCGTTTCT GTGTAAGAAA AATCTGAGAT ACGCCCGAGT
  Y
  CTTCCTGTCC TCTCTTCAGC CCCTACTTCT TTGATTCTCT TATAAACAGA GGGAAATGTA
  TTATATATAA ATAAATGTAG AGTGGTGCTG AGAAAAACCT GGAAGCGGGT CTGGGAGTGG
  GTAAGAGCAC TCGCTATAGC TTGAGGGCTG GAGTCCATAT TCCCAAGACC CATTTTTAGA
  AGCTGGACAT GTTTAGATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49503713	NES12860445	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	C	T	T	C	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33581347					SNP	C	T	T	T	T	C	T	T	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49503713	NES12860445	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136508352 () rs orientation: forward

Symbol	Name	Function Class
4933409D19Rik	RIKEN cDNA 4933409D19 gene	within coordinates
Gm33994	predicted gene, 33994	35 bp upstream
Gm57131	predicted gene, 57131	within coordinates
Rr367011	regulatory region 367011	901 bp downstream
Rr419472	regulatory region 419472	1148 bp distal
Rr419473	regulatory region 419473	936 bp distal
Rr419474	regulatory region 419474	1313 bp proximal
Tssr9072	transcription start site region 9072	963 bp downstream
Tssr9073	transcription start site region 9073	941 bp downstream
Tssr13942	transcription start site region 13942	67 bp upstream
Tssr13943	transcription start site region 13943	52 bp upstream
Tssr13944	transcription start site region 13944	25 bp upstream