rs33581351 SNP Detail

Summary

• ID
  rs33581351
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136508167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATAAGTT CTGTGACTCT
  AGAGAACCCT GACTAATACA GTTGGTTTTT TAAAGAGAAG GACTCCTCTG TTAAAATGGT
  TTGAGCTTTA AAGGACAGGA TCAAAGAGAA ACTGTTGAGT TTAGGGTGAG CATGACTTCG
  CTCTCAGGCA AGGAAAAGAA AAGCAGAAGC TATGGCCGCC GAGGTTAGTA GAGGGCTGGC
  Y
  GTGGCTGGCA GAGATGGCAT TTGGAGGCAT CACCCGCATA CTTTCCTGAA TCCATGGGAG
  AATCCTACCT GTACCAGGTC TCTGCTGCTT TGTATTCACC AAGTGGAGAC ACTGAGGTGG
  TACAATCTCA TCAGCTCAGC AAGCTTCCGT TTCTGTGTAA GAAAAATCTG AGATACGCCC
  GAGTTCTTCC TGTCCTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49503717	NES12860441	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33581351					SNP	C	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49503717	NES12860441	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136508167 () rs orientation: forward

Symbol	Name	Function Class
4933409D19Rik	RIKEN cDNA 4933409D19 gene	within coordinates
Gm33994	predicted gene, 33994	within coordinates
Gm57131	predicted gene, 57131	within coordinates
Rr367011	regulatory region 367011	716 bp downstream
Rr419471	regulatory region 419471	1966 bp distal
Rr419472	regulatory region 419472	963 bp distal
Rr419473	regulatory region 419473	751 bp distal
Rr419474	regulatory region 419474	1498 bp proximal
Tssr9072	transcription start site region 9072	778 bp downstream
Tssr9073	transcription start site region 9073	756 bp downstream
Tssr13942	transcription start site region 13942	100 bp downstream
Tssr13943	transcription start site region 13943	125 bp downstream
Tssr13944	transcription start site region 13944	152 bp downstream