rs33581979 SNP Detail

Summary

• ID
  rs33581979
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144368499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAG CCCTAGCTGT TATGGAGCTC
  K
  ACCTGTAGAC CAAGCTGGCC TCCAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45295743	mCV22517501	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T	G
ss147798068	ENSMUSSNP4634748	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T		G
ss320536501	CHEV_2_144352315	CHEVERUD	SCREENING_POP	f	SNP						T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33581979					SNP	G	G	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144368499 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12356	CpG island 12356	523 bp proximal
Dzank1	double zinc ribbon and ankyrin repeat domains 1	within coordinates
Polr3f	polymerase (RNA) III (DNA directed) polypeptide F	1166 bp upstream
Rr566471	regulatory region 566471	428 bp distal
Rr566472	regulatory region 566472	280 bp proximal
Rr566473	regulatory region 566473	809 bp proximal
Rr566474	regulatory region 566474	1180 bp proximal
Tssr20540	transcription start site region 20540	936 bp upstream
Tssr20541	transcription start site region 20541	1159 bp upstream
Tssr20542	transcription start site region 20542	1212 bp upstream
Tssr26607	transcription start site region 26607	762 bp downstream
Tssr26608	transcription start site region 26608	846 bp downstream
Tssr26609	transcription start site region 26609	860 bp downstream
Tssr26610	transcription start site region 26610	922 bp downstream
Tssr26611	transcription start site region 26611	947 bp downstream