rs33582573 SNP Detail

Summary

• ID
  rs33582573
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136515196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCAACCC ATACTAGGAG
  CTATGCTTGT AAGACTGATT TAGTATCTGA GCTCTAAAGC CTTGTTTGAA TTTTATTCTT
  TTATTCTATT AATGTAGATT TTGAAACAGG GTGTATTGTG CAGAATAAGC TAGTCTCAAA
  TTAATAACCC TCTTACTTCA GTCTCCTGAA TGCTGGGAGT GTGATATACT ATTTTTATAT
  R
  TACATTCTAT AAGATTAACT CAAGGTAATT ACTGTCGTTT TAAACTCATC TTTTTTTTTT
  TTCCTTATGG TGAATACCAC ACAATCTTCA GGTGGGTCTG AAGTGCTAGT TATAACTTCC
  TCCAATGTCA TGTGACCTCA GACCCTCCTA TCTAGTCTTT ACTGTATTCA CTTAAAAAAA
  AAAAACCCAT CTTAACAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49503641	NES12859834	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33582573					SNP	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49503641	NES12859834	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136515196 () rs orientation: forward

Symbol	Name	Function Class
4933409D19Rik	RIKEN cDNA 4933409D19 gene	within coordinates
Gm57131	predicted gene, 57131	within coordinates
Rr419475	regulatory region 419475	347 bp proximal
Rr419476	regulatory region 419476	1228 bp proximal