rs33583690 SNP Detail

Summary

• ID
  rs33583690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104433995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAACTTT AGAGTGAAAT
  ACATGTAGAT TCAGTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCCCTC
  TCTCTCTCTC TCTCATATAA CTAAGCATTT GACTAAAGAC TCTACCAGTG TGCTTCCCAC
  GTGATGAGAC CTGCAGAGTA GGGCCTCACT TTTCATTCTA GAACACTGGA GATTGCTTCA
  Y
  AATAGCTAAA GTAAACTGCT CCAGGAAGAA CACACTTTAA CATCTGGGCT CTAGAATAAG
  AGGTGTGGCC TAGCAGCTGA GTGTTTGCCT AGCATGTTCA AGGACTTGGG TTTTATCCTC
  AATGTCAGGG AGAAACGAAG AGAAAAAGAA AAAGAAAAAG AAAAAGGAAA AGGAAAAGGA
  AAAGGAAAAG AAAAAGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46831002	NES10732322	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33583690					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46831002	NES10732322	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104433995 () rs orientation: forward

Symbol	Name	Function Class
A530041M06Rik	RIKEN cDNA A530041M06 gene	26 bp upstream
Rr582533	regulatory region 582533	880 bp distal
Rr582534	regulatory region 582534	within coordinates
Rr582535	regulatory region 582535	1218 bp proximal