rs33584269 SNP Detail

Summary

• ID
  rs33584269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28912256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAG TCCTGTGTTA CTTAAAGTCA
  Y
  ATCGTGAATT TCCTGTTTGG TAGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39554338	mCV22893319	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss145423381	ENSMUSSNP1121249	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33584269					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28912256 () rs orientation: forward

Symbol	Name	Function Class
5830454J16Rik	RIKEN cDNA 5830454J16 gene	1820 bp upstream
Cpgi8896	CpG island 8896	659 bp distal
Mapk14	mitogen-activated protein kinase 14	within coordinates
Rr370201	regulatory region 370201	1846 bp downstream
Rr524633	regulatory region 524633	1532 bp distal
Rr524634	regulatory region 524634	704 bp distal
Rr524635	regulatory region 524635	313 bp distal
Rr524636	regulatory region 524636	within coordinates
Tssr143452	transcription start site region 143452	1949 bp downstream
Tssr143453	transcription start site region 143453	1883 bp downstream
Tssr143454	transcription start site region 143454	1837 bp downstream
Tssr143455	transcription start site region 143455	1811 bp downstream
Tssr143456	transcription start site region 143456	1457 bp downstream
Tssr143457	transcription start site region 143457	982 bp downstream
Tssr143458	transcription start site region 143458	666 bp downstream
Tssr143459	transcription start site region 143459	631 bp downstream