rs33584273 SNP Detail

Summary

• ID
  rs33584273
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46043225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACAAACAA AGCTGCGTAT ATACATACTT GTGACTTAAG
  ATTTTGTTCG TTTGTTTTTT GAGACAGGGT TTCTCTGTGT AGACCTGGCT GTCCTGGAAC
  K
  CACTCTGTAG ATCAGGCTGA CCTCAAACTC AGAGATCTGA CGCCTCTGCC TTCCGAGTGT
  TAGGATCAAA GATGTGCATA ACCATGCCCC AAAATGTAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss39554342	mCV24294300	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
ss145695575	ENSMUSSNP6127350	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss325403968	CHEV_17_45869248	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33584273					SNP	G	G	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46043225 () rs orientation: forward

Symbol	Name	Function Class
1600014C23Rik	RIKEN cDNA 1600014C23 gene	565 bp downstream
BE949265	cDNA sequence BE949265	81 bp downstream
Cpgi9207	CpG island 9207	1209 bp proximal
Rr331489	regulatory region 331489	425 bp distal
Rr339882	regulatory region 339882	975 bp proximal
Tssr148277	transcription start site region 148277	1544 bp downstream